A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences.
Identifieur interne : 001D51 ( Main/Exploration ); précédent : 001D50; suivant : 001D52A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences.
Auteurs : Jaime E. Blair [États-Unis] ; Michael D. Coffey ; Sook-Young Park ; David M. Geiser ; Seogchan KangSource :
- Fungal genetics and biology : FG & B [ 1096-0937 ] ; 2008.
Descripteurs français
- KwdFr :
- MESH :
- composition chimique : ADN des algues, Oomycetes, Phytophthora.
- génétique : ADN des algues, Oomycetes, Phytophthora.
- Analyse de séquence d'ADN, Génome, Phylogenèse.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : DNA, Algal.
- chemical , genetics : DNA, Algal.
- classification : Oomycetes, Phytophthora.
- genetics : Oomycetes, Phytophthora.
- Genome, Phylogeny, Sequence Analysis, DNA.
Abstract
Phytophthora species are devastating plant pathogens in both agricultural and natural environments. Due to their significant economic and environmental impact, there has been increasing interest in Phytophthora genetics and genomics, culminating in the recent release of three complete genome sequences (P. ramorum, P. sojae, and P. infestans). In this study, genome and other large sequence databases were used to identify over 225 potential genetic markers for phylogenetic analyses. Here, we present a genus-wide phylogeny for 82 Phytophthora species using seven of the most informative loci (approximately 8700 nucleotide sites). Our results support the division of the genus into 10 well-supported clades. The relationships among these clades were rigorously evaluated using a number of phylogenetic methods. This is the most comprehensive study of Phytophthora relationships to date, and many newly discovered species have been included. A more resolved phylogeny of Phytophthora species will allow for better interpretations of the overall evolutionary history of the genus.
DOI: 10.1016/j.fgb.2007.10.010
PubMed: 18039586
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Coffey</name></author><author><name sortKey="Park, Sook Young" sort="Park, Sook Young" uniqKey="Park S" first="Sook-Young" last="Park">Sook-Young Park</name></author><author><name sortKey="Geiser, David M" sort="Geiser, David M" uniqKey="Geiser D" first="David M" last="Geiser">David M. Geiser</name></author><author><name sortKey="Kang, Seogchan" sort="Kang, Seogchan" uniqKey="Kang S" first="Seogchan" last="Kang">Seogchan Kang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:18039586</idno><idno type="pmid">18039586</idno><idno type="doi">10.1016/j.fgb.2007.10.010</idno><idno type="wicri:Area/Main/Corpus">001E80</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001E80</idno><idno type="wicri:Area/Main/Curation">001E80</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001E80</idno><idno type="wicri:Area/Main/Exploration">001E80</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences.</title><author><name sortKey="Blair, Jaime E" sort="Blair, Jaime E" uniqKey="Blair J" first="Jaime E" last="Blair">Jaime E. 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Geiser</name></author><author><name sortKey="Kang, Seogchan" sort="Kang, Seogchan" uniqKey="Kang S" first="Seogchan" last="Kang">Seogchan Kang</name></author></analytic><series><title level="j">Fungal genetics and biology : FG & B</title><idno type="eISSN">1096-0937</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Algal (chemistry)</term><term>DNA, Algal (genetics)</term><term>Genome (MeSH)</term><term>Oomycetes (classification)</term><term>Oomycetes (genetics)</term><term>Phylogeny (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des algues (composition chimique)</term><term>ADN des algues (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Génome (MeSH)</term><term>Oomycetes (classification)</term><term>Oomycetes (génétique)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Algal</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Algal</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Oomycetes</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN des algues</term><term>Oomycetes</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Oomycetes</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des algues</term><term>Oomycetes</term><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genome</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Génome</term><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora species are devastating plant pathogens in both agricultural and natural environments. Due to their significant economic and environmental impact, there has been increasing interest in Phytophthora genetics and genomics, culminating in the recent release of three complete genome sequences (P. ramorum, P. sojae, and P. infestans). In this study, genome and other large sequence databases were used to identify over 225 potential genetic markers for phylogenetic analyses. Here, we present a genus-wide phylogeny for 82 Phytophthora species using seven of the most informative loci (approximately 8700 nucleotide sites). Our results support the division of the genus into 10 well-supported clades. The relationships among these clades were rigorously evaluated using a number of phylogenetic methods. This is the most comprehensive study of Phytophthora relationships to date, and many newly discovered species have been included. A more resolved phylogeny of Phytophthora species will allow for better interpretations of the overall evolutionary history of the genus.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18039586</PMID><DateCompleted><Year>2008</Year><Month>03</Month><Day>06</Day></DateCompleted><DateRevised><Year>2008</Year><Month>02</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1096-0937</ISSN><JournalIssue CitedMedium="Internet"><Volume>45</Volume><Issue>3</Issue><PubDate><Year>2008</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Fungal genetics and biology : FG & B</Title><ISOAbbreviation>Fungal Genet Biol</ISOAbbreviation></Journal><ArticleTitle>A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences.</ArticleTitle><Pagination><MedlinePgn>266-77</MedlinePgn></Pagination><Abstract><AbstractText>Phytophthora species are devastating plant pathogens in both agricultural and natural environments. Due to their significant economic and environmental impact, there has been increasing interest in Phytophthora genetics and genomics, culminating in the recent release of three complete genome sequences (P. ramorum, P. sojae, and P. infestans). In this study, genome and other large sequence databases were used to identify over 225 potential genetic markers for phylogenetic analyses. Here, we present a genus-wide phylogeny for 82 Phytophthora species using seven of the most informative loci (approximately 8700 nucleotide sites). Our results support the division of the genus into 10 well-supported clades. The relationships among these clades were rigorously evaluated using a number of phylogenetic methods. This is the most comprehensive study of Phytophthora relationships to date, and many newly discovered species have been included. A more resolved phylogeny of Phytophthora species will allow for better interpretations of the overall evolutionary history of the genus.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Blair</LastName><ForeName>Jaime E</ForeName><Initials>JE</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, The Pennsylvania State University, University Park, PA 16802, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coffey</LastName><ForeName>Michael D</ForeName><Initials>MD</Initials></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>Sook-Young</ForeName><Initials>SY</Initials></Author><Author ValidYN="Y"><LastName>Geiser</LastName><ForeName>David M</ForeName><Initials>DM</Initials></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Seogchan</ForeName><Initials>S</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2007</Year><Month>10</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Fungal Genet Biol</MedlineTA><NlmUniqueID>9607601</NlmUniqueID><ISSNLinking>1087-1845</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D048028">DNA, Algal</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D048028" MajorTopicYN="N">DNA, Algal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016678" MajorTopicYN="Y">Genome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="N">Oomycetes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2007</Year><Month>04</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2007</Year><Month>09</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2007</Year><Month>10</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2007</Year><Month>11</Month><Day>28</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2008</Year><Month>3</Month><Day>7</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2007</Year><Month>11</Month><Day>28</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">18039586</ArticleId><ArticleId IdType="pii">S1087-1845(07)00187-9</ArticleId><ArticleId IdType="doi">10.1016/j.fgb.2007.10.010</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Pennsylvanie</li></region><settlement><li>University Park (Pennsylvanie)</li></settlement><orgName><li>Université d'État de Pennsylvanie</li></orgName></list><tree><noCountry><name sortKey="Coffey, Michael D" sort="Coffey, Michael D" uniqKey="Coffey M" first="Michael D" last="Coffey">Michael D. Coffey</name><name sortKey="Geiser, David M" sort="Geiser, David M" uniqKey="Geiser D" first="David M" last="Geiser">David M. Geiser</name><name sortKey="Kang, Seogchan" sort="Kang, Seogchan" uniqKey="Kang S" first="Seogchan" last="Kang">Seogchan Kang</name><name sortKey="Park, Sook Young" sort="Park, Sook Young" uniqKey="Park S" first="Sook-Young" last="Park">Sook-Young Park</name></noCountry><country name="États-Unis"><region name="Pennsylvanie"><name sortKey="Blair, Jaime E" sort="Blair, Jaime E" uniqKey="Blair J" first="Jaime E" last="Blair">Jaime E. Blair</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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